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+--- Thread: Josuah 'sshbio' Demangeon (/Thread-Josuah-sshbio-Demangeon)
Josuah 'sshbio' Demangeon - josuah - 03-04-2016
Hi!
I've been around in IRC a for a few days, and I just discover this amazing forum, that covers everything I'm interested in about unix.
Thank you venam!
I'm a student in biology, but like unix OSes and making them feeling like home.
So here is me ^.
RE: Josuah 'sshbio' Demangeon - z3bra - 03-04-2016
Glad to meet some fresh people. It's cool to see someone whose studies are not tightly tied to computing!
Welcome here!
RE: Josuah 'sshbio' Demangeon - josuah - 03-04-2016
Thank you! I will follow with bioinformatics, so it is still computer-science in some way.
One thing that I already sent to IRC that comes from this mix is the biology ASCII art (in my class notes).
DNA, with a <a> href="https://raw.githubusercontent.com/sshbio/dot/6264a901eafd55fd68f1fbf00107821f11ccf3e1/bin/dna"script to generate it with colors</a> like so:
Code:
$ dna ATGTCGTATGCCode:
O O *---*
\\ / / \
P N. NH2 ||||||| O * *
/ \ // `. / \\ / `. ,'|
O- O * *---* *---N `O' *
/ \ // \\ / \ /
* ,O. N---* N |||||||| HN * O O-
|,' `. / \ / \ // \ /
* * N===* *---* P
\ / // \ / \\
*---* Adenine O * O O
| |
O O *---*
\\ / / \
P N. O ||||||| H2N * *
/ \ // `. // \ / `. ,'|
O- O * *---* *---N `O' *
/ \ // \ / \ /
* ,O. N---* NH |||||||| N * O O-
|,' `. / \ / \\ // \ /
* * N===* *---* P
\ / \ // / \\
*---* Guanine NH2 ||||||| O O O
| |
O O O ||||||| H2N *---*
\\ / // \ / \
P *---* *===N * *
/ \ // \\ / \ / `. ,'|
O- O * N |||||||| HN *---N `O' *
/ \ / \ // \ /
* ,O. N---* *---* * O O-
|,' `. / \ // `. // \ /
* * NH2 ||||||| O `N P
\ / / \\
*---* Cytosine O O
| |
O O * O *---*
\\ / \ // / \
P *---* *===N * *
/ \ // \ / \ / `. ,'|
O- O * NH |||||||| N *---N `O' *
/ \ / \\ // \ /
* ,O. N---* *---* * O O-
|,' `. / \\ / `. // \ /
* * O ||||||| H2N `N P
\ / / \\
*---* Thymine O O
| |Baceriophage: virus devouring bacteria, and like so:
Code:
,. ,---------- Virus genome |
,' `./ |
,' ,--./`. |
| / /"\\ | |
| ( (,-.\) | -------- Protein capside | Head
| \/`-'/) | |
| (\\_// | |
`. \`-' ,' |
`. ,'
_}{_ | Collar
/| |\
/<| |>\ |
<| |> |
<| |> |
<| |> |
/\/\ <| |> /\/\ ----- Long tail fibre | Tail
/ /\ \ <| |> / /\ \ |
/ / \ \<| |>/ / \ \ |
/ / \ \"||"/ / \ \ |
/ /==||==\ -----\---- Base plate |Code:
.^.
.'XXX'. .^. .^.
|XXXXX| phage .' '. .' '.
'.XXX.' |XXXXX| | |
| | '.XXX.' '. .'
+ + |X| | |
/\/||V||\/\ +X+ + +
/ / | | \ \ /\/|| ||\/\ /\/|| ||\/\
.--------------------. .--------- ----------. .--------- ----------.
| Host bacteria | | | | X |
| | | | | X-- phage |
| | | | | X genome |
| | | | | X |
| | | | | X XX |
| | | | | XX XX |
| | | | | |
'--------------------' '--------------------' '--------------------'
Absorption Viral genome genome injection
.--------------------------------------------------------------------------.
| Host bacteria |
| |
| . .--. .--. _ _ _ _ |
| / / \ \ / \ < > < > < > < > |
| . . . . . . |
| | | | | < | | > : - : : - : > H H |
| ' ' ' ' ' ' _ _ |
| \ \ / / \ / _ _ |
| ' '--' '--' /V | V\ /V | V\ /V|V\ /V|V\ |
| |
| genome proteins protein complexes |
| |
'--------------------------------------------------------------------------'
Genome replication and expression Assembling of proteins
- **Maturation phase**:
.------------------------------------------------------.
| Host bacteria |
| ,---. |
| .--. / V |
| / \ _ _ |
| . . < > <&> _ |
| | | <&> |
| ' ' H > H > H |
| \ / _ _ /V|V\ |
| '--' /V|V\ /V|V\ |
| |
'------------------------------------------------------'
Encapsidation
- **Freeing and cell lysis**:
\^|^/
.------------------------. .------' \^|^/ '-' H /
| \^|^/ \^|^/ | / H <&> |
| H H | <&> " |
|\^|^/ <&> _ <&> | \^|^/ " _ |
| H _ " <&> " _ | > H <&> \
| <&> <&> H <&> | <&> H _
| " H /V|V\ H | " _ /V|V\ <&>
| /V|V\ /V|V\| \ <X> H
'------------------------' '----, H ,---------, /V|V\
/V|V\
Cell lysis and freeing of the virionsGlomerule phisiology (in kidney)
Code:
| | |
| v -+----------- Proteins and other constituents of the blood
| |
.-| |-.
/ / \ \-------- Glomerule
/ / /| |\ \ `---.
( ( ( | | ) ) \
\ \ \| |/ / ,-. |
\ \ / / | -+- Primary urine, with higher [proteins]
'-| |-' / / [constituents] than the outgoing blood
| | / /
| | / /
| | | / /
| v -++---+------ Blood in lower [proteins] and [canstituents]
| || |
| >> -+------ Solvant drag: water flowing back to the blood
| || |
: :: :
,/ :||\ `.
,:/ .:||:\ `:.
::/ ::||::\ `::.
:/ ::||:::\ `:::.
/ .::||::::\ `::::.
:::||:::::\ `:::::.
:::||::::::\ `:::::.
.:::||:::::::\ `::::::.
|:::||::::::::\ `:::::::.
|:::||:::::::::| |::::::|
| || | | |
| || |
/'---''---------'/ Proteins, transiting in a paracellular way
\.---..---------.\ Na+, H2O
| || |
average| || low | high
[Na+] | || [Na+] | [Na+]
| || |
| || <=< Na+, Glucose Symport, passive passage of glucose
| || | against the gradient due to the Na+
| || | gradient
| || |
| <=< Na+ K+ ATPase Increasing the existing gradient
| || | use of ATP
| || |
| <=< Glucose transporter Benifiting the gradient created by
| || | the symport
average| || high | low
[Glc] | || [Glc] | [Glc]
| || |
'---''---------'
.---..---------.
| || |
low | || average | high
[H+] | || [H+] | [H+]
| || | Antiport exploiting the active
| || H+ >=> H+ tansport of Na+ to recaptate Na+
| || Na+ <=< Na+ and evacuate H+
| || |
| >=> H+ | Passive H+ transports (gradient)
| || |
| <=< Na+ | Active Na+ transports (ATP)
| || |
'---''---------'
.---..---------.
| || |
| || | high
| || | [H+]
| || |
| || H2CO3- >=> H+ + HCO3- Acidification process that can
| || | fight against a respiratory
| || |^ | |^ alcalosis
| || || | ||
| || v| | ||
| || | v|
| || H+ |
| || + <=< H2CO3-
| || HCO3- |
| || |
'---''---------'
.---..---------.
/| | || | /
/ '-------------------' 99% Glucose
/ | || | 99% Amino acids
\ | || | 60~70% Na+
\ .-------------------. 60~70% H2O
\| | || | \
| || |
--------------------------------> H+
| || |
| || | | |
|:::||:::::::::' |::::::|
|:::||::::::::/ ,::::::;'
|:::||:::::::/ ,:::::;"
|:::||::::::/ ,::::;"
':::||:::::/ ,:::;"
\ \::||::::/ ,::;"
:\ .:||:::/ ,:;"
::\ |:||::/ ,;"
`:\ ':||:/ ,''
`\ \||/ ,'
: :: :
| || |
| || |
| || |
| || |RE: Josuah 'sshbio' Demangeon - venam - 04-04-2016
Hello sshbio, welcome to the forums.
I love your style already. You're going to show us another side of Unix.
RE: Josuah 'sshbio' Demangeon - Dworin - 04-04-2016
Welcome to nixers. I'm not a biologist but I always find it fascinating.
RE: Josuah 'sshbio' Demangeon - kirby - 04-04-2016
Wow this is pretty cool, good to have you sshbio.
RE: Josuah 'sshbio' Demangeon - locc - 04-04-2016
Welcome friend, enjoy the forums!
RE: Josuah 'sshbio' Demangeon - xero - 04-04-2016
Quote:welcome to nixers
RE: Josuah 'sshbio' Demangeon - arcetera - 04-04-2016
will he summon the cookie?
RE: Josuah 'sshbio' Demangeon - josuah - 04-04-2016
Hi Venam, kirby, locc, xero, arcetera, and the other nixers!
Quote:will he summon the cookie?
I know the magic formula: <code>curl -L https://p.iotek.org/tb9</code>;
Code:
⠀⠀⠀⠀⠀⣀⡤⠴⣶⠶⡶⣶⣶⣄⡀⠀⠀⠀⠀
⠀⠀⢀⢴⣕⣯⣄⣀⣝⢾⣿⡋⠉⣹⣿⣷⣄⠀⠀
⠀⢠⣹⡽⠿⣶⠿⣿⡷⣿⡷⠶⣭⣿⣽⠿⣿⣆⠀
⠀⢸⣿⢦⠤⣶⣴⡋⠈⠛⡷⢿⢿⣅⣀⣽⣏⡧⠀
⠀⠀⠻⢵⣿⣫⣯⣟⢿⡷⠛⡳⢹⣦⣯⣽⣍⠌⠀
⠀⠀⠀⠈⠙⢓⡍⠿⡾⢆⡤⣾⡿⠗⠎⠅⠀⠀⠀
⠀⠀⠀⠀⠀⠀⠈⠈⠊⠁⠉⠐⠀⠀⠀⠀⠀⠀RE: Josuah 'sshbio' Demangeon - tudurom - 04-04-2016
(03-04-2016, 09:15 PM)sshbio Wrote: Hi!
I've been around in IRC a for a few days, and I just discover this amazing forum, that covers everything I'm interested in about unix.
Thank you venam!
I'm a student in biology, but like unix OSes and making them feeling like home.
So here is me ^.
welcome to nixers
RE: Josuah 'sshbio' Demangeon - acg - 06-04-2016
(03-04-2016, 09:15 PM)sshbio Wrote: Hi!
I've been around in IRC a for a few days, and I just discover this amazing forum, that covers everything I'm interested in about unix.
Thank you venam!
I'm a student in biology, but like unix OSes and making them feeling like home.
So here is me ^.
Welcome to the forum!
And thank you for all your help. Very glad you're now part of the nixers in other way.
RE: Josuah 'sshbio' Demangeon - pranomostro - 06-04-2016
I haven't said hello yet, have I?
How rude of me.
Well, you seem like a very interesting addition to the community.
Hello!
RE: Josuah 'sshbio' Demangeon - josuah - 17-06-2016
I said I was studying biology, I will switch for computer science, from day one of licence one. It is because I spent my days at computer science rather than biology. Let's not be limited in our choices, and benefit that it is still quite easy to change.
RE: Josuah 'sshbio' Demangeon - apk - 17-06-2016
(17-06-2016, 04:20 PM)sshbio Wrote: I said I was studying biology, I will switch for computer science, from day one of licence one. It is because I spent my days at computer science rather than biology. Let's not be limited in our choices, and benefit that it is still quite easy to change.
good luck with the switch, computer science is a very interesting field of study.
RE: Josuah 'sshbio' Demangeon - josuah - 18-06-2016
(17-06-2016, 11:00 PM)dsplayer14 Wrote: very interesting field of study
:) thank you! I think so.
RE: Josuah 'sshbio' Demangeon - josuah - 26-08-2016
Well... Now I need to introduce myself again, as I will change my nick name everywhere on the internet, from <code>sshbio</code> (nick made out of ssh and bio) to <code>josuah</code> (my first name).
I do not plan to use sshbio anymore (I will free it, so anyone may take it), but I'll keep the old mail jd@ssh.bio until the end of my old domain ownership.
So by now:
Code:
IRC: sshbio -> josuah
domain: ssh.bio -> josuah.net
mail: jd@ssh.bio -> mail@josuah.net
github: sshbio -> josuah
lobsters: sshbio -> josuah
ycombinator: sshbio -> josuah
reddit: sshbio -> not decided yet, josuah is already taken. Maybe picking my old josuahdemangeon.
twitter: sshbio -> nothing, probably (quitting twitter)I will try to do my best to make thing simple to everybody, as I do not like nick changes myself.
The reason is that I want to remove the gap between the online me and the offline me to hopefully bring the fun I have on internet everywhere else. As I am progressively getting off all social networks, I may not have the same issues as before: with the first and last name, one may know a lot of info about anyone with facebook & co.
And I will try remind you that I was sshbio each time I join nixers.net/#unix or in forums.
RE: Josuah 'sshbio' Demangeon - Adrift - 26-08-2016
Hey, you informed everyone, lots of people delete everything and drop off the face of the internet when they do things like this.
Now, more importantly. Is your name pronounced like Joshua or is lt like Joshua without the H, or is it something else entirely?
RE: Josuah 'sshbio' Demangeon - robotchaos - 26-08-2016
Also, you keeping the spider avatar?
RE: Josuah 'sshbio' Demangeon - z3bra - 26-08-2016
I've always wanted to do the same! But couldn't fully do it, as now I feel that "z3bra" is a huge part of me. Also I paid z3bra.org for another year anyway :P
I still like to sometimes connect under a different nick that I find cool on the moment! Also, none of my machines have a "z3bra" account, hehe
I feel like people using their real name on internet seem more "serious". So nice move here!
RE: Josuah 'sshbio' Demangeon - josuah - 26-08-2016
(26-08-2016, 02:55 PM)Adrift Wrote: Hey, you informed everyone, lots of people delete everything and drop off the face of the internet when they do things like this.
Now, more importantly. Is your name pronounced like Joshua or is like Joshua without the H, or is it something else entirely?
Yeah, I was told of people cutting the bridge with their 'old themself'
To pronounce it, it's "jozua" (I do not know the IPA). Glad you care!
(26-08-2016, 03:21 PM)crashaku Wrote: Also, you keeping the spider avatar?
Yes, I'll keep it as long as I can. Maybe it will be another spider, but I like this one for now.
(26-08-2016, 03:47 PM)z3bra Wrote: I've always wanted to do the same! But couldn't fully do it, as now I feel that "z3bra" is a huge part of me. Also I paid z3bra.org for another year anyway :P
I still like to sometimes connect under a different nick that I find cool on the moment! Also, none of my machines have a "z3bra" account, hehe
I feel like people using their real name on internet seem more "serious". So nice move here!
That is encouraging. On the other hand, I kinda liked the game with the z3bra. But I still want to be a clown sometimes (/nick bozo).